Engineering and Technology: Biomedical, Engineering and Technology: Chemical, Engineering and Technology: Computer
Interns in this geographically-distributed REU program have the opportunity to participate in research using the Rosetta Commons software. The Rosetta Commons software suite includes algorithms for computational modeling and analysis of protein structures. It has enabled notable scientific advances in computational biology, including de novo protein design, enzyme design, ligand docking, and structure prediction of biological macromolecules and macromolecular complexes.
Students learn the inner details of the Rosetta C++ code and community coding environment. Students research in a molecular modeling and design laboratory, developing new algorithms and discovering new science. Interns are mentored by faculty and graduate interns.
-One week of Rosetta Code School, where you will learn the inner details of the Rosetta C++ code and community coding environment, so you are fully prepared for the summer!
-8 weeks of hands-on research in a molecular modeling and design laboratory, developing new algorithms and discovering new science.
-The summer will finish with a trip to the Rosetta Conference, where you will present your research in a poster and connect with Rosetta developers from around the world. The sponsor, NSF, will provide housing, travel expenses, and a stipend.
"Computational design of stimulus-responsive enzymes for therapeutics"
"A hybrid, integrative approach to build high-resolution structural models of amyloid protein aggregates in neurodegenerative diseases"
“Glycoengineering for immunotherapy and biofuels”
“Designing a fluorescent biosensor for DNA crossovers”
“Design of self-assembling protein nanomaterials: three-dimensional crystals”
“Computer-based Design of Dengue Virus Vaccine Antigens”
“Rosetta Computer Aided Drug Design”
…and many more
Desired Skills & Experience:
-College Sophomores or Juniors preferred.
-Major in computer science, engineering, mathematics, chemistry, biology, and/or biophysics.
-Available for at least 10 weeks during the summer of 2019.
-Interest in graduate school
-While not required, we seek candidates with some combination of experiences in scientific or academic research, C++/Python/*nix/databases, software engineering, object-oriented programming, and/or collaborative development.
-Only U.S. citizens and permanent residents are eligible to apply per NSF guidelines.
Additional Salary Information: Housing
About Johns Hopkins Institute for NanoBioTechnology
The Johns Hopkins Institute for NanoBioTechnology brings together expertise from Bloomberg School of Public Health, School of Medicine, Whiting School of Engineering, Applied Physics Lab, and Krieger School of Arts and Sciences to create new knowledge and new technologies at the interface of nanoscience and medicine.
AVS is a partner in the AIP Career Network, a collection of online job sites for scientists, engineers,
and computing professionals. Other partners include Physics Today, the American Association of Physicists in Medicine (AAPM), American Association of Physics Teachers (AAPT),
American Physical Society (APS Physics), IEEE Computer Society, and the Society of Physics Students (SPS) and Sigma Pi Sigma.